Yeah, that's one of the first thing I thought of when seeing pics of everything and saw that the sensor strip was wired, will be hell trying to set it up with the projector at the back of the room. Nintendo definitely should have made that sucker bluetooth like the controllers to play nice with home theatre type setups.
But Im not worried too much. Im sure that 3rd parties will notice that shortcomming and come up with longer cords or a wireless solution in no time, that is if nintendo doesnt first.
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